FastQCFastQC Report
Sun 21 May 2023
EGAF00007932170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449194
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61201.362440281927185No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17750.39515220595110356No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16240.3615364408251223No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14790.3292564014657364No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14690.32703019185474425No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12680.2822833786738024No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11200.24933547643111886No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10300.22929958993218963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9920.22083999341041957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9830.21883640476052665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8980.19991362306709348No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8840.19679692961170453No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8120.18076822041256116No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6910.15383108411955637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6600.14692983432548076No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.1411416893369012No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6280.13980596357030592No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5890.1311237460874366No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5710.1271165687876508No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5570.12399987533226178No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5540.12333201244896415No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5450.12132842379907122No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.11732124649928538No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4610.10262826306673731No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4580.10196040018343967No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4500.10017943249464596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)