FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461692
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25530.5529660466284883No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22840.49470209576947405No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC20020.4336224149432955No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18700.4050319260459354No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16130.3493671105412266No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15690.3398369475754399No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15370.3329059199639587No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG14140.3062647825823276No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC13850.29998353880942275No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13580.29413548426223546No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11770.2549318593347946No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10910.23630472262893878No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9740.21096315292446047No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9230.19991682766866223No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9200.19926704383008584No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8450.18302244786567667No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7910.17132633877130207No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG7680.16634466267554993No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7080.1533489859040226No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6400.13862055222962494No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6180.1338554707467316No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5480.11869384784661637No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5430.1176108747823224No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5170.1119794148479939No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5050.10938027949368843No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5010.10851390104225328No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT4830.10461519801079507No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4670.10114968420505445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)