FastQCFastQC Report
Wed 31 May 2023
EGAF00007932172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461692
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61091.323176489954342No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA52781.1431863666686881No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33600.7277578992055309No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28290.612746159777514No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26640.5770080486558139No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22210.48105663515937036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19130.4143454943988633No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15420.3339888930282526No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC14980.3244587300624659No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12730.2757249421692384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10720.23218942498462175No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10600.2295902896303163No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9810.21247931521447197No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9220.19970023305580345No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC8420.1823726640271003No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8020.17370887951274877No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7310.15833066199977475No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7200.15594812125832805No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6430.1392703360682013No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6250.13537163303674313No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5850.12670784852239156No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5480.11869384784661637No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5350.11587811787945211No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5190.1124126040737115No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4890.10591476568794782No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4800.1039654141722187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)