FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503379
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28460.5653791675854575No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25670.5099537326745851No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC22610.44916454599814454No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21250.4221471296975043No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17280.3432801129963705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16700.33175797957403863No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16410.3259969128628727No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG15230.3025553310726113No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15180.30156204370861717No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGCCAC13970.2775244894999593No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13230.2628238365128462No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11410.22666817646345996No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10320.20501451192838793No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10290.20441853950999145No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9540.18951922905007956No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8710.17303065880777704No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8570.1702494541885935No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG8120.16130986791264632No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7880.15654208856547452No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7130.1416427781055626No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6750.13409379413920725No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6040.11998911357049064No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6020.11959179862489297No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT6020.11959179862489297No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5660.11244012960413526No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5420.10767235025696345No Hit
GTACAGAGCAGCCACGTCGTTCAGCGCTTTGACGTGCTCGCTAC5350.10628174794737166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)