FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517266
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33290.6435760324475222No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32810.6342964741544969No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18760.3626760699524036No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17680.34179706379309677No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15050.2909528173125626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14290.2762601833486059No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11540.22309604729481544No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9860.19061759326922706No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8940.17283177320759532No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8490.16413218730788415No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8040.15543260140817297No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7850.15175944291718382No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.1463463672462524No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6700.12952716784014412No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6660.12875387131572538No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6360.1229541473825846No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.11947431302270012No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6160.11908766476049074No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.10729489276310447No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5190.10033522404333554No Hit

[OK]Adapter Content

Adapter graph