FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493910
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26250.5314733453463182No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23060.46688667975947035No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17980.36403393330768763No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG14130.28608450932356094No Hit
TTGACCTTCGACCTGCGCAGTAACGCCTTTACCCTCGATAGCCT9520.1927476665789314No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8370.1694640724018546No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7450.15083719706019316No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6410.12978072928266285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6380.12917333117369562No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT5960.12066975764815453No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5870.11884756332125286No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5530.11196371808629103No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5410.10953412565042214No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5370.10872426150513252No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5180.10487740681500678No Hit
GATAGCGCCCAGGACTTTACGAACGGCGGACTCCGCCGCACCTT5160.10447247474236196No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5140.10406754266971716No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5070.1026502804154603No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)