FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498781
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26590.5330996970614358No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23340.4679408397673528No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17360.3480485423462401No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG13930.27928088680202334No Hit
TTGACCTTCGACCTGCGCAGTAACGCCTTTACCCTCGATAGCCT8630.17302182721474957No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7510.1505670825472502No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6850.1373348222967595No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6700.13432749042164796No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT6400.12831282667142493No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6120.12269914050455011No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5720.11467958883758604No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5570.1116722569624745No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5460.10946688025405939No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5390.10806345871234067No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5290.10605857079559967No Hit
GATAGCGCCCAGGACTTTACGAACGGCGGACTCCGCCGCACCTT5230.10485563804555507No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5180.10385319408718456No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5070.10164781737876945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)