FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463479
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66121.426601852511117No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15140.3266598918181838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11670.25179134329710734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11400.24596583663984775No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8730.18835804858472552No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7820.16872393355470258No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7150.15426804666446592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6980.15060013506545064No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6220.13420241262279414No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5760.12427747535487044No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5700.12298291831992388No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4990.10766399340638949No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4730.10205424625495438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)