FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469403
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69241.4750651359279765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15690.3342543613909583No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12730.2711955398665965No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11940.25436565168948644No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8880.1891764645730854No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7760.1653163699422458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7440.1584992000477202No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7340.15636883445568095No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6290.1339999957392688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5880.1252654968119079No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5810.12377424089748042No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4910.10460095056912717No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4900.10438791400992325No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4880.10396184089151539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)