FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502836
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22470.4468653795670954No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG15650.311234676912552No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13810.2746422292755491No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT11800.23466895767208393No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11670.23208362169773047No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.12906792671964618No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5450.10838523892481843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)