FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502948
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28710.5708343606098444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27430.5453844134980157No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24790.49289389757986907No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA23360.464461534790873No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20110.3998425284522456No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16940.33681414380810737No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16130.32070909915140333No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14140.2811423845009822No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14070.2797505905183041No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13520.26881506636869024No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA13080.26006664704899907No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12990.25827719764269863No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10610.21095620223164224No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10200.2028042660473846No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9780.19445350215131585No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9400.1868980491024917No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9280.18451211656075778No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8710.17317893698752157No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8610.17119065986940996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8530.16960003817492067No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8280.16462934537964163No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7850.1560797537717617No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7650.15210319953553847No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7560.150313750129238No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7350.14613836818120363No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7300.14514422962214782No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7270.14454774648671434No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7250.144150091063092No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG7190.14295712479222503No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6960.13838408742056832No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6940.137986431996946No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6710.1334133946252893No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6650.13222042835442233No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6480.12884035725363258No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6010.11949545479850798No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.11850131623945218No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5850.11631421140952942No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5810.11551890056228477No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5680.11293414030873966No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5590.11114469090243921No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5550.11034938005519458No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5480.10895758607251645No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5450.10836110293708295No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5070.10080564988825882No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5040.10020916675282535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)