FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506546
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28670.5659900581585877No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27540.543682113766568No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24810.48978769943894535No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA22190.43806485491939523No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20830.4112163554741327No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16830.33225018063512496No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15500.3059939275011549No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG14350.28329115223494017No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13860.2736177958171617No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13560.2676953327042361No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA13360.2637470239622857No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13140.25940388434614037No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11650.22998898421860997No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11000.2171569808072712No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10030.19800768340881184No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9780.19307229748137386No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9410.18576792630876562No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8990.17747647795066984No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8730.17234367658613434No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8700.17175143027484177No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA8290.1636573973538435No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7780.15358921006187No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7590.14983831675701714No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7550.14904865500862705No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7340.14490293082957917No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7300.14411326908118907No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7200.14213911471021387No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7040.13898046771665357No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6990.13799339053116597No Hit
CTGAGGCTGGGTCGCCGGAACCGGTGGAACCGGACCCATGCTGG6970.13759855965697093No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6840.1350321589747032No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6570.12970194217307018No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6430.12693812605370489No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5970.11785701594721901No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5830.11509319982785374No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5770.11390870720526863No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5690.11232938370848847No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5540.1093681521520257No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5490.1083810749665381No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5440.1073939977810505No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5320.10502501253588026No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5290.10443276622458769No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5130.1012741192310274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)