FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537276
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32540.6056477490154036No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14570.2711827812893187No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13040.2427057973927739No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11600.21590393019602586No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11200.2084589670858181No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10950.20380586514193821No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10530.19598865387622003No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10430.1941274130986681No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.17830686648947655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9370.17439826085661744No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9200.17123415153477914No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8020.14927151035966618No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6520.12135289869638695No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6210.11558305228597593No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6150.11446630781944477No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6000.11167444665311684No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5580.10385723538739865No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)