FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541692
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13550.25014214719803873No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12080.22300495484518876No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10680.19716000974723644No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10370.191437200475547No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9470.17482259291257762No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8850.16337697436919874No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7960.14694697355692904No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7930.14639315330483005No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5920.10928719641419848No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5670.10467202764670698No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5660.10448742089600734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)