FastQCFastQC Report
Sun 21 May 2023
EGAF00007932200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541692
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32190.5942491305022042No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14590.26934124927080333No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13050.24091180966305578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11860.21894360632979626No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11750.21691293207210002No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10820.19974450425703166No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10780.199006077254233No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10730.19808304350073472No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10390.1918064139769463No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10030.18516057095175856No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.1768532671702739No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8230.15193135582581985No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6470.11944056770267975No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6070.11205629767469336No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5980.11039483691839644No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5810.10725652215650221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)