FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506434
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32230.6364106675302211No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22250.439346489374726No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11660.23023730634199124No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10730.21187361038160946No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10630.20989901941812755No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8970.17712080942432776No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6870.13565439919120756No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6850.13525948099851118No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6720.13269251274598468No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6560.1295331672044136No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6180.12202972154318234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5900.11650086684543295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)