FastQCFastQC Report
Wed 31 May 2023
EGAF00007932204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464251
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67251.4485698469147077No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21590.46505015605782213No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10150.21863173154177373No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9910.21346211424423428No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9570.20613848973938664No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8390.18072120469315092No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5930.12773262739337127No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5880.1266556237897172No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5860.12622482234825558No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5820.12536321946533233No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5170.11136217261782959No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5080.10942356613125229No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4950.10662335676175172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)