FastQCFastQC Report
Wed 31 May 2023
EGAF00007932206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512873
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31170.6077527965012781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16460.32093715208248436No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.24177525430272212No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9690.1889356624349498No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9570.18659590190943956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9490.18503606155909944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9090.1772368598073987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8520.1661229973112252No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8450.16475813700467756No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8070.15734889534056187No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7850.1530593343771265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7220.14077559161819786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7210.14058061157440535No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6660.12985670916581687No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6590.12849184885926926No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6400.12478722802721143No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6180.12049766706377601No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5540.10801894426105488No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5340.10411934338520451No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5130.10002476246556163No Hit

[OK]Adapter Content

Adapter graph