FastQCFastQC Report
Wed 31 May 2023
EGAF00007932207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513707
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12070.23495883840399293No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11260.21919109531308703No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8990.17500248195956059No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8870.17266652002016714No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8500.16546397070703728No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7980.15534146896966558No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7180.13976838937370914No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6630.12906189715148908No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6460.12575261773734833No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6390.12438997327270214No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6330.12322199230300541No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6080.11835540492926902No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5730.11154218260603808No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5540.10784357620199841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)