FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502052
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12720.2533602096993937No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11730.2336411367746767No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11630.23164931122672552No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10480.20874331742528662No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10350.20615394421295002No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9740.19400380837044767No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9720.19360544326085743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9010.17946348187040387No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6970.1388302406921992No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6880.13703759769904314No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6090.12130217587022858No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6050.1205054456510481No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5950.11851362010309688No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5770.11492833411678471No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5410.10775776214416036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)