FastQCFastQC Report
Sun 21 May 2023
EGAF00007932210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502052
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29750.5925681005154845No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13010.2591365037884522No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12920.2573438607952961No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12490.24877901093910593No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12390.24678718539115468No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11950.23802315298016938No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11010.21929999282942803No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10880.21671061961709143No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10730.21372288129516462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10080.2007760152334818No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6930.13803351047301873No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6720.13385067682232119No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6590.13126130360998461No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6290.125285826966131No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6190.1232940014181798No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.11990789798666274No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5720.1139324213428091No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5710.11373323878801399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)