FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459684
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10750.23385630128523074No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10530.2290704048868353No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10520.2288528641414537No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG9970.21688812314546516No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9170.19948486351493636No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9070.19730945606112024No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8860.19274110040810644No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7970.17337997406914316No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6320.1374857510811775No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5920.1287841212659131No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5890.12813149902976828No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5240.11399135057996364No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4930.1072475874731337No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4890.10637742449160728No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4660.10137398734783025No Hit
CGGAGAACCGCCCTGACCCATAACCTGAATCGGCTGCAGGACCG4640.10093890585706702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)