FastQCFastQC Report
Wed 31 May 2023
EGAF00007932213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470041
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13160.27997557659863714No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11870.25253116217521454No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11770.25040368818890263No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11680.248488961601222No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10860.231043674913465No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9880.21019442984760903No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9170.19508936454479503No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9100.19360013275437674No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8470.1801970466406122No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8210.17466561427620142No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA8110.17253814028988962No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7610.16190077035833045No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7340.1561565905952885No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7330.15594384319665733No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7330.15594384319665733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7210.15339087441308313No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6760.14381724147467986No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6750.1436044940760487No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6610.1406260304952121No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6440.137009324718482No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6230.13254162934722716No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.1267974495841852No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5960.1267974495841852No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5920.12594645998966048No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT5790.1231807438074551No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5740.12211700681429918No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5560.11828755363893788No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA5500.1170110692471508No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5100.10850117330190344No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5060.10765018370737871No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4890.1040334779306486No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4770.1014805091470744No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4720.10041677215391848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)