FastQCFastQC Report
Sun 21 May 2023
EGAF00007932214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470041
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27980.5952672213700507No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23790.506126061343585No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16210.34486353318114804No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15650.33294967885780175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14870.31635538176456945No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14560.3097602124070028No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14150.3010375690631243No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12140.25827534193825646No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10070.21423663042160154No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9720.2067904714695101No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9120.19402562755163913No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9070.19296189055848317No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8610.1831755102214488No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA8370.17806957265430037No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7640.162539012554224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7530.16019879116928099No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7330.15594384319665733No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7280.1548801062035014No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7160.1523271374199272No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.14424273627194226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6700.14254075708289277No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6480.13786031431300674No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6360.13530734552943255No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6360.13530734552943255No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.1306269027595465No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6050.12871217617186587No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA5920.12594645998966048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5750.12232975421293037No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5610.11935129063209379No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC5420.11530909005810133No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5410.11509634265947012No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5280.11233062647726474No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5160.10977765769369055No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4790.10190600394433677No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)