FastQCFastQC Report
Sun 21 May 2023
EGAF00007932215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472319
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14190.30043254664749885No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12630.26740402143466596No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12500.26465164433359656No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11460.24263262752504136No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11140.23585754543010126No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10250.21701434835354919No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9480.20071180706259964No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9210.19499533154499396No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8760.18546787234898449No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8380.17742246236124315No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8210.17382319999830623No Hit
GAACTCGGTCAGGCCCATGCGGCGTTTGTTGGAGATGTCGTAAA8040.1702239376353693No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7790.16493090474869737No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7360.15582688818362167No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7170.151804183189751No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7130.15095729792788348No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6950.1471463142494797No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6750.14291188794014215No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6420.1359250845297352No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6330.13401959269053332No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6200.1312672155894639No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5880.12449213349452382No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT5770.12216319902438819No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5660.11983426455425253No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5650.11962254323878566No Hit
AAATTCGGTCAGGCCCATACGACGTTTGTTAGAGATGTCGTAGA5650.11962254323878566No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5560.11771705139958376No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5440.11517639561398124No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5400.11432951035211371No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5330.11284746114384558No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5170.10945992009637553No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4920.1041668872097036No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4870.10310828063236922No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT4800.10162623142410109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)