FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472319
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28810.6099691098600734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26340.5576739449397546No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17460.3696654168051677No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16090.3406595965862055No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15780.3340962358067323No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14660.31038344847444205No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13840.29302230060615814No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12110.2563945130303884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10350.21913156150821797No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10300.21807295493088355No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9680.20494623337193718No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9620.20367590547913594No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9330.19753598733059646No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA8230.17424664262923997No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7740.16387229817136298No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7650.1619668063321611No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7590.16069647843935986No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7420.15709721607642294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7390.1564620521300223No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7140.15116901924335036No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6740.14270016662467527No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.14037123215453964No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6370.1348664779524008No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6060.1283031171729276No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6040.12787967454199387No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5970.12639762533372573No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5970.12639762533372573No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA5760.1219514777089213No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5620.11898737929238502No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5550.11750533008411687No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5530.11708188745318313No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC5470.11581155956038186No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5370.11369434640571309No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA4920.1041668872097036No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4780.10120278879316733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)