FastQCFastQC Report
Sun 21 May 2023
EGAF00007932218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435336
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61901.4218902181303636No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25120.5770255618648584No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16230.372815480456475No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14460.33215723027730304No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13950.3204421412426264No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13690.3144697429112226No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13610.3126320818861753No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10940.251300145175221No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9670.22212727640259478No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8870.2037506661521216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8670.1991565135895033No Hit
GTCCACATCAAACTGCCGAAGCTGGCTGCAA8430.19364353051436134No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7730.17756399654519728No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7670.17618575077641177No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7140.16401124648547327No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6810.1564308947571531No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.15574177187276034No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6720.15436352610397486No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6620.1520664498226657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6250.14356726758182184No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6240.14333755995369094No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.13437896245658526No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5730.13162247091901427No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5680.1304739327783597No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5550.1274877336126578No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA5470.1256500725876105No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5470.1256500725876105No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.12289358105003952No Hit
AGCGTGCACATCAAGATCCCGAAAGTTTCCC4970.11416469118106475No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4960.11393498355293383No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4930.11324586066854107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4850.11140819964349377No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA4700.10796258522153003No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4600.10566550894022088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)