FastQCFastQC Report
Wed 31 May 2023
EGAF00007932220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467175
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28290.6055546636699309No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24890.5327767967035908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21540.4610691924867555No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13260.2838336811687269No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12160.2602879006796168No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.24594637983624978No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11000.23545780489110077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10860.23246106919248677No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10210.2185476534489217No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10050.2151228126505057No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10000.21405254990100067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9010.19286134746080164No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8280.17723551131802856No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6380.13656552683683845No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6210.13292663348852143No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5780.1237223738427784No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5510.11794295499545139No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5180.11087922084871836No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5060.10831059024990636No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4980.10659816985069835No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4840.10360143415208434No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4800.10274522395248033No Hit

[OK]Adapter Content

Adapter graph