FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461383
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22220.48159555076801697No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19370.4198247443013722No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15130.32792712345274966No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9300.2015678947858937No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8930.19354852692882052No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8190.17750979121467414No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7680.16645606795222193No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7330.1588701794387743No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7230.15670278272064642No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6360.13784643127293378No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5420.1174729021225316No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5390.11682268310709325No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5360.11617246409165488No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5310.11508876573259094No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4810.10425178214195148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)