FastQCFastQC Report
Sun 21 May 2023
EGAF00007932223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483231
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37820.7826484641920737No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33350.6901461205924289No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18350.37973557160033194No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17220.35635131024292727No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15200.3145493563119916No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT14210.29406226007851316No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11860.2454312740697513No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11630.2406716456518725No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11560.23922306308990937No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11140.2305315677181307No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10900.2255649989342571No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10310.21335551734056796No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9880.20445708160279452No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9510.19680028806098948No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9390.1943170036690527No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9000.18624632939525818No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8950.18521162756528453No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8750.1810728202453899No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8640.17879647621944786No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7920.16389676986782717No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7850.16244818730586408No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7760.16058572401191148No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7700.15934408181594312No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7610.1574816185219905No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7590.15706773779000105No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7460.15437751303206954No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG7300.15106646717615385No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7220.14941094424819598No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7010.14506519656230663No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6950.14382355436633826No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6680.1382361644844805No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6640.13740840302050158No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6460.13368347643259643No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6400.13244183423662803No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6160.12747526545275448No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6160.12747526545275448No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6140.12706138472076503No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5970.12354339849885458No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5940.1229225774008704No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5850.1210601141069178No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5750.1189907104469705No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5550.11485190312707587No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5500.11381720129710221No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5430.11236861873513909No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5410.11195473800314963No Hit
GACGTCATCATCTTCGTCTTCTTCGTCATCGGTACCAGTCGGTT5240.10843675178123921No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5210.107815930683255No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5170.10698816921927608No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5150.10657428848728662No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA5000.10347018299736566No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4920.1018146600694078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)