FastQCFastQC Report
Wed 31 May 2023
EGAF00007932232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475661
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47961.0082811077637226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40070.842406671978573No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG16460.3460447671766237No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12050.25333167949442986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.23104690104927667No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10770.22642175835311282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8000.16818700713323145No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7880.16566420202623297No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7470.15704461791065485No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7170.15073760514315868No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6390.13433937194766862No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5810.12214581393050934No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5340.112264827261432No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5100.10721921704743503No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5090.1070089832885185No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4880.10259407435127119No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4820.10133267179777193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)