FastQCFastQC Report
Sun 21 May 2023
EGAF00007932236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472277
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46060.9752751033821253No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18080.3828261803983679No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12820.2714508646408781No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12660.26806302233646784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9250.19585963322372252No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8100.17150951666077324No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7440.15753466715508058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6740.14271285707328538No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5640.11942144123046432No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5160.1092579143172333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)