FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480587
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37740.7852896561912827No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18390.382657042325323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16090.33479890217588076No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11870.24698961894516497No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10520.2188989714661445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10420.21681818276399487No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9040.1881032986743295No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9030.18789521980411455No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8990.18706290432325468No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8880.18477403675089005No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT8550.17790743403379616No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8150.1695842792251975No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7860.1635499919889635No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7620.1585560991038043No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7500.15605915266122472No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7170.14919254994413084No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6840.14232594722703693No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5500.11444337861823146No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5470.11381914200758655No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5340.11111411669479199No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5250.1092414068628573No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5210.10840909138199743No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5090.10591214493941785No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4820.10029401544361374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)