FastQCFastQC Report
Wed 31 May 2023
EGAF00007932239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455305
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17360.38128287631367985No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15430.3388937086129078No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11300.2481852823931211No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10000.21963299326824876No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9090.19964639088083813No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8690.19086107115010817No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7880.17307079869538No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7750.1702155697828928No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7740.16999593678962455No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7530.1653836439309913No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA7490.1645051119579183No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7180.15769648916660262No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7170.15747685617333435No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7030.1544019942675789No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6300.13836878575899672No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5630.12365337521002405No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5300.11640548643217184No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5060.11113429459373386No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5030.11047539561392912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)