FastQCFastQC Report
Sun 21 May 2023
EGAF00007932240

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932240
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455305
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44360.9742919581379514No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35930.7891413448128178No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16960.37249755658294986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15110.33186545282832386No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10820.23764289871624514No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9670.21238510449039655No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8680.19064143815683993No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8630.18954327319049868No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8570.1882254752308892No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8540.18756657625108442No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8080.177463458560745No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT7970.17504749563479427No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7740.16999593678962455No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7500.16472474495118655No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6920.15198603134162814No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6900.15154676535509165No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6390.14034548269841096No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5440.11948034833792731No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5070.11135392758700212No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5040.11069502860719738No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4670.10256860785627217No Hit

[OK]Adapter Content

Adapter graph