FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498944
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48590.9738567855310416No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17610.35294542072857876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15340.3074493329912776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8430.16895683683940482No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6490.13007471780400207No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5900.11824974345818369No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5500.11023281169830683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)