FastQCFastQC Report
Sun 21 May 2023
EGAF00007932256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533282
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61201.1476104575065351No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52140.977719105463901No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA47200.8850851894494844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21740.40766423768287696No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19830.3718482903979508No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15610.2927156738836113No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14440.2707760621959864No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13680.25652469050146076No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC12960.2430233910013839No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC11560.21677086419567884No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11060.2073949617650699No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11010.206457371522009No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10920.20476970908449937No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT10440.1957688427511148No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC10400.19501877055666608No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9390.176079447646836No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9220.17289164082042896No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8680.1627656661953713No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8670.16257814814675914No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8480.15901530522312773No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8370.15695260668839375No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8260.15488990815365977No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8130.15245217352170146No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7860.14738918620917263No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7700.14438889743137776No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7670.14382634328554122No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7450.1397009462160733No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7430.13932591011884896No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7310.13707569353550278No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7200.13501299500076883No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6360.1192614789173458No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6270.11757381647983618No Hit
GTACACGGCCACACCCAGGGCCCGTGGGACC6130.11494856379926567No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5690.1066977696603298No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5670.10632273356310545No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC5650.10594769746588109No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.10332244478531058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)