FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514448
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52511.0207056884272074No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24670.4795431219481852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15320.2977949180480826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13470.26183404347961314No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11570.22490125338226605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10900.21187758529530681No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9800.19049544366000062No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5870.11410288309022486No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)