FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468358
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47501.0141814594818495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20470.4370588310651254No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18710.3994807390927453No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14840.3168516391307504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12250.2615520606032138No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11180.23870628877909633No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8760.18703641231707369No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8110.17315813971363786No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7590.16205552163088918No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.15202046297917404No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.13451248831022422No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.1287476673826432No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5800.12383689399988898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5790.12362338211368226No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5760.12298284645506216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)