FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474859
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51841.0916924813470947No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46240.9737627379916985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16950.35694806247749333No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15250.32114796181603383No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12640.2661842778593224No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11130.2343853649188496No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10910.22975241071560187No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10440.21985473582684542No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9210.19395231005414237No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8930.18805582288637257No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8540.17984285861697893No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8380.17647343737825333No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7400.15583573229105901No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6380.13435567189418332No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.11729797687313497No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5320.11203325618762622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)