FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480248
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50051.0421698788959037No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33400.6954740050973663No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32090.6681964318435475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15660.3260815245456514No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13150.2738168612883343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8400.17490963002448737No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8030.16720527727340875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7570.15762689277206776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6320.13159867401842382No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5480.11410771101597508No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5180.10786093851510054No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5170.10765271276507139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)