FastQCFastQC Report
Wed 31 May 2023
EGAF00007932272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487306
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50441.0350785748585076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35570.7299315009460174No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32830.6737039970778115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15660.32135865349492926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13420.2753916430333302No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7820.1604741168793325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7590.15575428991229331No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6930.14221043861557214No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6250.1282561675825867No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA6070.1245623899562082No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.11881651364850834No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5500.1128654274726763No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5250.10773518076937283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)