FastQCFastQC Report
Sun 21 May 2023
EGAF00007932274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472720
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24680.5220849551531562No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20310.4296412252496193No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12450.26336943645286853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12400.2623117278727365No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11970.2532154340836013No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11660.24665764088678288No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10530.2227534269757996No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9670.2045608393975292No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8100.17134878998138434No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7680.16246403790827552No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7330.15506007784735149No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7060.14934845151463869No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6790.1436368251819259No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6790.1436368251819259No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6320.13369436452868505No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5310.1123286512100186No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.1015400236926722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)