FastQCFastQC Report
Sun 21 May 2023
EGAF00007932275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454360
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12850.28281538867858086No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12200.268509551897174No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9760.21480764151773926No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9190.20226252310942866No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9090.20006162514305836No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8940.19676027819350295No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7990.1758517475129853No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7780.17122986178360772No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7480.16462716788449686No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6770.14900079232326788No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6290.13843648208469056No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5880.1294128004225724No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5840.1285324412360243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5740.126331543269654No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5670.12479091469319484No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4910.10806409014878071No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4770.10498283299586232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)