FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454360
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45631.0042697420547582No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23610.5196320098600229No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20040.4410599524606039No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12250.2696100008803592No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11460.252222906946034No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10730.23615635179153094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10200.22449159256976847No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9680.213046923144643No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8250.18157408222554802No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7050.15516330662910469No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6920.1523021392728233No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6480.14261818822079408No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.13821639228805352No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6100.134254775948587No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6080.13381459635531295No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5580.12281010652346158No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4570.10058103706312176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)