FastQCFastQC Report
Wed 31 May 2023
EGAF00007932277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496665
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT26040.5242970613995349No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24110.48543787059688126No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG23270.46852506216463813No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17660.35557166299215764No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12380.24926258141805846No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12370.24906123846053174No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA11680.2351685743911892No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10660.21463159272346552No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10040.20214832935680993No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8560.17234957164285786No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG7570.15241661884771426No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7260.14617498716438646No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6330.12745009211440306No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6000.12080577451602187No Hit
CAGTTCGGTCAGCATCGGCAGGTCAACCGCGATGCCCGCAGATT5770.11617488649290769No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT5540.11154399846979351No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5370.10812116819183958No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5150.1036916231262521No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5120.103087594253672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)