FastQCFastQC Report
Wed 31 May 2023
EGAF00007932280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524405
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32900.6273776947206835No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18430.35144592442863815No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17470.33313946281976714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13810.26334607793594644No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12560.239509539382729No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12250.23359807782153108No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11430.21796130853062043No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10670.20346869309026422No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8760.16704646218094793No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8530.16266053908715591No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8020.1529352313574432No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7400.14111230823504733No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7200.13729846206653254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6060.11555953890599822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)