FastQCFastQC Report
Wed 31 May 2023
EGAF00007932281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492859
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38250.7760840321471252No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC32870.666925023181072No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24350.49405610935379085No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22010.44657802738714314No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19930.4043752878612341No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG16680.3384335073520013No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16330.3313320848356224No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16290.3305204936908933No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16130.32727412911197723No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16100.3266654357534305No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15680.3181437287337758No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15590.3163176486581355No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT14420.29257860767481164No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13250.26883956669148784No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13160.26701348661584756No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12930.2623468375336557No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12720.2580859840238283No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12000.24347734341870594No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11030.2237962581590272No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10990.2229846670142982No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10090.20472386625789524No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9870.20026011496188564No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9610.19498477252114704No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9530.193361590231689No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9100.184636985425852No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7690.15602839757415407No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7680.1558254997879718No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7390.1499414639886864No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6930.1406081658243027No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6740.13675310788683986No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6590.13370964109410602No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6550.13289804994937698No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6500.13188356101846574No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6220.1262024230053626No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6190.12559372964681584No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5940.12052128499225945No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA5810.11788361377189013No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5600.11362276026206278No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5240.10631843995950159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)