FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492859
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49200.9982571080166945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC42720.8667793425705932No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG39020.7917071616831589No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28530.5788673839779734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25780.5230704927778533No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT25140.510085034462189No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22840.46341854364027035No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG18370.37272323321680234No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17640.35791169482549773No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17500.3550711258189462No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG16960.34411464536510444No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16930.34350595200655765No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15600.31652054644431776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15420.31286838629303715No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG14780.2998829279773728No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14100.28608587851697953No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13700.2779699670696893No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13660.2771583759249603No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12230.2481439925008978No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11430.23191216960631741No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10760.21831801793210634No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10590.21486875556700802No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT10320.2093905153400871No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10140.20573835518880654No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9910.20107170610661468No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9810.19904272824479213No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9530.193361590231689No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9320.18910073672186162No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9040.18341959870875849No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8490.17226022046873446No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8070.16373851344907975No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7570.15359362413996702No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC7060.143245837044672No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6940.14081106361048495No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6850.13898498353484465No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6690.13573861895592856No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6380.12944878758427866No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC6190.12559372964681584No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5860.11889810270280142No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5110.10368076873913229No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC4990.10124599530494524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)