FastQCFastQC Report
Wed 31 May 2023
EGAF00007932283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521158
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT39810.7638758303623854No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC33320.6393454576155408No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26460.5077155104594No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA23930.45916977193096914No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19300.37032915162004615No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17940.3442334186561465No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17670.3390526481412547No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17380.333488116847482No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17370.3332962364580415No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16970.325621020880424No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG16490.3164107621872829No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT16420.31506759946119983No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT16000.30700862310470145No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14500.2782265646886357No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13830.26537057859612634No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13290.25500903756634263No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13210.25347399445081914No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12270.23543723784341794No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11900.22833766343412168No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11700.22450005564531292No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11300.2168248400676954No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11120.2133709930577675No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11010.21126030877392266No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9560.1834376523050591No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9470.18171072880009517No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9430.18094320724233343No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9210.17672183867464378No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7610.14602097636417363No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7580.14544533519585232No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7470.1433346509120075No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG7330.14064832545984135No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7210.13834576078655608No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT7100.13623507650271127No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6960.13354875105054512No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6470.12414661196796366No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6010.11532011405370349No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6000.11512823366426304No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5630.10802865925496681No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5620.1078367788655264No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5250.10073720445623016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)